HL_7UCJ_001

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGCAGGAGCGU

Length

13 nucleotides

Bulged bases

7UCJ|1|2|G|18, 7UCJ|1|2|G|19, 7UCJ|1|2|A|21

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCJ|1|2|G|10
7UCJ|1|2|G|11
7UCJ|1|2|C|12
7UCJ|1|2|G|13
7UCJ|1|2|C|14
7UCJ|1|2|A|15
7UCJ|1|2|G|18
7UCJ|1|2|G|19
7UCJ|1|2|A|21
7UCJ|1|2|G|22
7UCJ|1|2|C|23
7UCJ|1|2|G|24
7UCJ|1|2|U|25

Current chains

Chain 2

P-site tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain J

60S ribosomal protein L11

Chain o

60S ribosomal protein L36a