HL_7UCJ_007

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7UCJ|1|5|G|134, 7UCJ|1|5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_007 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.136

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UCJ|1|5|C|131
7UCJ|1|5|G|132
7UCJ|1|5|C|133
7UCJ|1|5|G|134
7UCJ|1|5|G|135
7UCJ|1|5|C|136
7UCJ|1|5|G|137

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

60S ribosomal protein L37