HL_7UCJ_008

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7UCJ|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3398

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7UCJ|1|5|U|204
7UCJ|1|5|C|205
7UCJ|1|5|U|206
7UCJ|1|5|G|207
7UCJ|1|5|A|208
7UCJ|1|5|U|209
7UCJ|1|5|C|210
7UCJ|1|5|G|211

Current chains

Chain 5

28s rRNA

Nearby chains

Chain Y

60S ribosomal protein L26

Chain e

60S ribosomal protein L32