HL_7UCJ_022
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UCJ_022 not in the Motif Atlas
- Geometric match to HL_3IGI_005
- Geometric discrepancy: 0.367
- The information below is about HL_3IGI_005
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
7UCJ|1|5|C|1436
7UCJ|1|5|C|1437
7UCJ|1|5|U|1438
7UCJ|1|5|U|1440
7UCJ|1|5|C|1441
7UCJ|1|5|C|1442
7UCJ|1|5|A|1443
7UCJ|1|5|G|1444
7UCJ|1|5|U|1445
7UCJ|1|5|C|1446
7UCJ|1|5|C|1447
7UCJ|1|5|G|1448
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- 60S ribosomal protein L7
- Chain Q
- 60S ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
Coloring options: