HL_7UCJ_023

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7UCJ|1|5|C|1481, 7UCJ|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_023 not in the Motif Atlas

Homologous match to HL_8CRE_017

Geometric discrepancy: 0.5269

The information below is about HL_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7UCJ|1|5|G|1479
7UCJ|1|5|C|1480
7UCJ|1|5|C|1481
7UCJ|1|5|G|1482
7UCJ|1|5|C|1483
7UCJ|1|5|G|1484
7UCJ|1|5|C|1485
7UCJ|1|5|C|1486

Current chains

Chain 5

28s rRNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain i

60S ribosomal protein L36