HL_7UCJ_028

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

7UCJ|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_028 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.3225

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCJ|1|5|C|1763
7UCJ|1|5|G|1764
7UCJ|1|5|A|1765
7UCJ|1|5|A|1766
7UCJ|1|5|A|1767
7UCJ|1|5|C|1768
7UCJ|1|5|G|1769

Current chains

Chain 5

28s rRNA

Nearby chains

Chain PP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18