HL_7UCJ_035

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGA(B8W)AACU

Length

9 nucleotides

Bulged bases

7UCJ|1|5|A|2379

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_035 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1439

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7UCJ|1|5|A|2376
7UCJ|1|5|C|2377
7UCJ|1|5|G|2378
7UCJ|1|5|A|2379
7UCJ|1|5|B8W|2380
7UCJ|1|5|A|2381
7UCJ|1|5|A|2382
7UCJ|1|5|C|2383
7UCJ|1|5|U|2384

Current chains

Chain 5

28s rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31