HL_7UCJ_042

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7UCJ|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_042 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1764

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7UCJ|1|5|G|2624
7UCJ|1|5|U|2625
7UCJ|1|5|U|2626
7UCJ|1|5|C|2627
7UCJ|1|5|U|2628
7UCJ|1|5|C|2629
7UCJ|1|5|U|2630
7UCJ|1|5|U|2631
7UCJ|1|5|U|2632

Current chains

Chain 5

28s rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22