HL_7UCJ_047

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7UCJ|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_047 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1624

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCJ|1|5|U|2810
7UCJ|1|5|G|2811
7UCJ|1|5|A|2812
7UCJ|1|5|A|2813
7UCJ|1|5|C|2814
7UCJ|1|5|A|2815
7UCJ|1|5|G|2816

Current chains

Chain 5

28s rRNA

Nearby chains

Chain R

60S ribosomal protein L19