HL_7UCJ_056

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

7UCJ|1|5|A|3876, 7UCJ|1|5|A|3877, 7UCJ|1|5|C|3878, 7UCJ|1|5|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_056 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.104

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7UCJ|1|5|G|3873
7UCJ|1|5|G|3874
7UCJ|1|5|G|3875
7UCJ|1|5|A|3876
7UCJ|1|5|A|3877
7UCJ|1|5|C|3878
7UCJ|1|5|G|3879
7UCJ|1|5|P7G|3880
7UCJ|1|5|G|3881
7UCJ|1|5|C|3882

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32