HL_7UCJ_057

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGAUCG

Length

8 nucleotides

Bulged bases

7UCJ|1|5|U|4060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_057 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3508

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7UCJ|1|5|C|3948
7UCJ|1|5|A|3949
7UCJ|1|5|U|4060
7UCJ|1|5|G|4061
7UCJ|1|5|A|4062
7UCJ|1|5|U|4063
7UCJ|1|5|C|4064
7UCJ|1|5|G|4065

Current chains

Chain 5

28s rRNA

Nearby chains

Chain i

60S ribosomal protein L36