HL_7UCJ_058
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(I4U)G(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7UCJ|1|5|G|4195
- QA status
- Modified nucleotides: I4U, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UCJ_058 not in the Motif Atlas
- Homologous match to HL_8P9A_165
- Geometric discrepancy: 0.1024
- The information below is about HL_8P9A_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
7UCJ|1|5|C|4193
7UCJ|1|5|I4U|4194
7UCJ|1|5|G|4195
7UCJ|1|5|OMG|4196
7UCJ|1|5|G|4197
7UCJ|1|5|G|4198
7UCJ|1|5|C|4199
7UCJ|1|5|G|4200
7UCJ|1|5|G|4201
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain I
- Ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
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