HL_7UCJ_061
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UCJ_061 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1187
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
7UCJ|1|5|C|4270
7UCJ|1|5|A|4271
7UCJ|1|5|G|4272
7UCJ|1|5|A|4273
7UCJ|1|5|A|4274
7UCJ|1|5|G|4275
7UCJ|1|5|G|4276
7UCJ|1|5|G|4277
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain I
- Ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain o
- 60S ribosomal protein L36a
Coloring options: