HL_7UCJ_067

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

7UCJ|1|5|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_067 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.3377

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UCJ|1|5|U|4497
7UCJ|1|5|U|4498
7UCJ|1|5|G|4499
7UCJ|1|5|PSU|4500
7UCJ|1|5|U|4501
7UCJ|1|5|C|4502
7UCJ|1|5|A|4503

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3