HL_7UCJ_068

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_068 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0907

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCJ|1|5|C|4540
7UCJ|1|5|G|4541
7UCJ|1|5|U|4542
7UCJ|1|5|G|4543
7UCJ|1|5|A|4544
7UCJ|1|5|G|4545

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

60S ribosomal protein L8