HL_7UCJ_073

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7UCJ|1|5|A|4910, 7UCJ|1|5|A|4911, 7UCJ|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_073 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1369

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7UCJ|1|5|C|4906
7UCJ|1|5|G|4907
7UCJ|1|5|G|4908
7UCJ|1|5|A|4909
7UCJ|1|5|A|4910
7UCJ|1|5|A|4911
7UCJ|1|5|G|4912
7UCJ|1|5|G|4913
7UCJ|1|5|G|4914
7UCJ|1|5|G|4915

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a