HL_7UCJ_091

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7UCJ|1|9|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_091 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1095

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7UCJ|1|9|C|462
7UCJ|1|9|C|463
7UCJ|1|9|A|464
7UCJ|1|9|A|465
7UCJ|1|9|G|466
7UCJ|1|9|G|467

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain V

60S ribosomal protein L23