HL_7UCJ_094

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_094 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1618

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|A|569
7UCJ|1|9|C|570
7UCJ|1|9|U|571
7UCJ|1|9|U|572
7UCJ|1|9|U|573
7UCJ|1|9|A|574
7UCJ|1|9|A|575
7UCJ|1|9|A|576
7UCJ|1|9|U|577
7UCJ|1|9|C|578
7UCJ|1|9|C|579
7UCJ|1|9|U|580
7UCJ|1|9|U|581

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24