HL_7UCJ_112

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_112 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.1329

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7UCJ|1|9|C|1565
7UCJ|1|9|G|1566
7UCJ|1|9|G|1567
7UCJ|1|9|C|1568
7UCJ|1|9|A|1569
7UCJ|1|9|G|1570

Current chains

Chain 9

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain TT

40S ribosomal protein S19