HL_7UCJ_121

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_121 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.2676

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7UCJ|1|5|A|3724
7UCJ|1|5|G|3725
7UCJ|1|5|A|3726
7UCJ|1|5|A|3727
7UCJ|1|5|A|3728
7UCJ|1|5|PSU|3729

Current chains

Chain 5

28s rRNA

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

60S ribosomal protein L36a