HL_7UCK_007

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7UCK|1|5|G|134, 7UCK|1|5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_007 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.136

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7UCK|1|5|C|131
7UCK|1|5|G|132
7UCK|1|5|C|133
7UCK|1|5|G|134
7UCK|1|5|G|135
7UCK|1|5|C|136
7UCK|1|5|G|137

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

60S ribosomal protein L37