HL_7UCK_040
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 7UCK|1|5|U|2530, 7UCK|1|5|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UCK_040 not in the Motif Atlas
- Geometric match to HL_5TBW_035
- Geometric discrepancy: 0.1156
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7UCK|1|5|G|2523
7UCK|1|5|U|2524
7UCK|1|5|U|2525
7UCK|1|5|C|2526
7UCK|1|5|A|2527
7UCK|1|5|G|2528
7UCK|1|5|A|2529
7UCK|1|5|U|2530
7UCK|1|5|C|2531
7UCK|1|5|C|2532
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain X
- 60S ribosomal protein L23a
- Chain g
- 60S ribosomal protein L34
Coloring options: