HL_7UCK_041

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_041 not in the Motif Atlas

Geometric match to HL_3AM1_003

Geometric discrepancy: 0.1263

The information below is about HL_3AM1_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7UCK|1|5|C|2561
7UCK|1|5|G|2562
7UCK|1|5|C|2563
7UCK|1|5|G|2564
7UCK|1|5|A|2565
7UCK|1|5|G|2566

Current chains

Chain 5

28s rRNA

Nearby chains