HL_7UCK_043

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7UCK|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_043 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1698

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7UCK|1|5|G|2624
7UCK|1|5|U|2625
7UCK|1|5|U|2626
7UCK|1|5|C|2627
7UCK|1|5|U|2628
7UCK|1|5|C|2629
7UCK|1|5|U|2630
7UCK|1|5|U|2631
7UCK|1|5|U|2632

Current chains

Chain 5

28s rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22