HL_7UCK_053

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7UCK|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_053 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3719

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCK|1|5|C|3668
7UCK|1|5|G|3669
7UCK|1|5|C|3670
7UCK|1|5|G|3671
7UCK|1|5|G|3672
7UCK|1|5|C|3673
7UCK|1|5|G|3674

Current chains

Chain 5

28s rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

60S ribosomal protein L15