HL_7UCK_058

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGAUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_058 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1609

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7UCK|1|5|C|3948
7UCK|1|5|A|3949
7UCK|1|5|U|4060
7UCK|1|5|G|4061
7UCK|1|5|A|4062
7UCK|1|5|U|4063
7UCK|1|5|C|4064
7UCK|1|5|G|4065

Current chains

Chain 5

28s rRNA

Nearby chains

Chain i

60S ribosomal protein L36