HL_7UCK_068

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

7UCK|1|5|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_068 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.2642

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UCK|1|5|U|4497
7UCK|1|5|U|4498
7UCK|1|5|G|4499
7UCK|1|5|PSU|4500
7UCK|1|5|U|4501
7UCK|1|5|C|4502
7UCK|1|5|A|4503

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3