HL_7UCK_070

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_070 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0961

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCK|1|5|C|4603
7UCK|1|5|G|4604
7UCK|1|5|A|4605
7UCK|1|5|G|4606
7UCK|1|5|A|4607
7UCK|1|5|G|4608

Current chains

Chain 5

28s rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

60S ribosomal protein L40