HL_7UCK_074

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7UCK|1|5|A|4910, 7UCK|1|5|A|4911, 7UCK|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_074 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2353

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7UCK|1|5|C|4906
7UCK|1|5|G|4907
7UCK|1|5|G|4908
7UCK|1|5|A|4909
7UCK|1|5|A|4910
7UCK|1|5|A|4911
7UCK|1|5|G|4912
7UCK|1|5|G|4913
7UCK|1|5|G|4914
7UCK|1|5|G|4915

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a