HL_7UCK_108

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_108 not in the Motif Atlas

Geometric match to HL_3IGI_003

Geometric discrepancy: 0.0864

The information below is about HL_3IGI_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7UCK|1|9|A|1353
7UCK|1|9|G|1354
7UCK|1|9|C|1355
7UCK|1|9|G|1356
7UCK|1|9|A|1357
7UCK|1|9|U|1358

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain CC

40S ribosomal protein S2