HL_7UCK_122

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7UCK|1|9|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_122 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3429

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

7UCK|1|9|U|885
7UCK|1|9|A|886
7UCK|1|9|U|887
7UCK|1|9|U|888
7UCK|1|9|U|889
7UCK|1|9|U|890
7UCK|1|9|G|891
7UCK|1|9|U|892
7UCK|1|9|U|893
7UCK|1|9|G|894
7UCK|1|9|G|895
7UCK|1|9|U|896
7UCK|1|9|U|897
7UCK|1|9|U|898
7UCK|1|9|U|899
7UCK|1|9|C|900
7UCK|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6