HL_7UG6_061

3D structure

PDB id

7UG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7UG6|1|1|U|2842, 7UG6|1|1|A|2845, 7UG6|1|1|U|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UG6_061 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2449

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7UG6|1|1|C|2840
7UG6|1|1|G|2841
7UG6|1|1|U|2842
7UG6|1|1|U|2843
7UG6|1|1|C|2844
7UG6|1|1|A|2845
7UG6|1|1|U|2846
7UG6|1|1|A|2847
7UG6|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain s

Nuclear GTP-binding protein NUG1