HL_7UG7_028

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UG7_028 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1117

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UG7|1|16|C|1314
7UG7|1|16|U|1315
7UG7|1|16|G|1316
7UG7|1|16|C|1317
7UG7|1|16|A|1318
7UG7|1|16|A|1319
7UG7|1|16|C|1320
7UG7|1|16|U|1321
7UG7|1|16|C|1322
7UG7|1|16|G|1323

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SM

30S ribosomal protein S13

Chain SN

30S ribosomal protein S14

Chain SS

30S ribosomal protein S19