HL_7UG7_040

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7UG7|1|23|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UG7_040 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.0759

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7UG7|1|23|C|305
7UG7|1|23|U|306
7UG7|1|23|G|307
7UG7|1|23|G|308
7UG7|1|23|A|309
7UG7|1|23|A|310
7UG7|1|23|A|311
7UG7|1|23|G|312

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LX

50S ribosomal protein L24