HL_7UG7_106

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAG(H2U)CGGUAG

Length

10 nucleotides

Bulged bases

7UG7|1|Pt|C|17, 7UG7|1|Pt|G|18, 7UG7|1|Pt|G|19, 7UG7|1|Pt|U|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UG7_106 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.2062

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7UG7|1|Pt|C|13
7UG7|1|Pt|A|14
7UG7|1|Pt|G|15
7UG7|1|Pt|H2U|16
7UG7|1|Pt|C|17
7UG7|1|Pt|G|18
7UG7|1|Pt|G|19
7UG7|1|Pt|U|20
7UG7|1|Pt|A|21
7UG7|1|Pt|G|22

Current chains

Chain Pt

tRNA-Phe

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain LE

50S ribosomal protein L5