HL_7UNR_033

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

7UNR|1|A|U|1312, 7UNR|1|A|U|1316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNR_033 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.1292

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7UNR|1|A|G|1311
7UNR|1|A|U|1312
7UNR|1|A|U|1313
7UNR|1|A|A|1314
7UNR|1|A|A|1315
7UNR|1|A|U|1316
7UNR|1|A|C|1317

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain U

50S ribosomal protein L22