HL_7UNW_013

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7UNW|1|A|G|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNW_013 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.0855

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UNW|1|A|G|401
7UNW|1|A|G|402
7UNW|1|A|A|403
7UNW|1|A|C|404
7UNW|1|A|C|405
7UNW|1|A|A|406
7UNW|1|A|U|407
7UNW|1|A|C|408

Current chains

Chain A

23S Ribosomal RNA

Nearby chains