HL_7UOO_005

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7UOO|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1067

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7UOO|1|1|U|194
7UOO|1|1|U|195
7UOO|1|1|G|196
7UOO|1|1|G|197
7UOO|1|1|A|198
7UOO|1|1|A|199
7UOO|1|1|C|200
7UOO|1|1|A|201

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 9

Ribosome biogenesis protein ALB1

Chain Y

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32