HL_7UOO_024

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

GUUUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_024 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2866

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7UOO|1|1|G|1072
7UOO|1|1|U|1073
7UOO|1|1|U|1074
7UOO|1|1|U|1082
7UOO|1|1|G|1083
7UOO|1|1|A|1084
7UOO|1|1|A|1085
7UOO|1|1|C|1086

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L21-A