HL_7UOO_029

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

UUGAUG

Length

6 nucleotides

Bulged bases

7UOO|1|1|U|1348, 7UOO|1|1|G|1354, 7UOO|1|1|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_029 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2548

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7UOO|1|1|U|1347
7UOO|1|1|U|1348
7UOO|1|1|G|1354
7UOO|1|1|A|1355
7UOO|1|1|U|1356
7UOO|1|1|G|1357

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain E

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L18-A