HL_7UOO_053

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

7UOO|1|1|A|2696, 7UOO|1|1|A|2697, 7UOO|1|1|G|2698, 7UOO|1|1|G|2699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_053 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2379

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7UOO|1|1|C|2693
7UOO|1|1|A|2694
7UOO|1|1|A|2695
7UOO|1|1|A|2696
7UOO|1|1|A|2697
7UOO|1|1|G|2698
7UOO|1|1|G|2699
7UOO|1|1|G|2700

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain v

Ribosome production factor 2 homolog