HL_7UQB_001

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

AAGCAU

Length

6 nucleotides

Bulged bases

7UQB|1|1|C|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_001 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.0815

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7UQB|1|1|A|39
7UQB|1|1|A|40
7UQB|1|1|G|41
7UQB|1|1|C|42
7UQB|1|1|A|43
7UQB|1|1|U|44

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2