HL_7UQB_059

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

U(OMU)G(PSU)UCA

Length

7 nucleotides

Bulged bases

7UQB|1|1|G|2922, 7UQB|1|1|C|2925

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_059 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2683

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7UQB|1|1|U|2920
7UQB|1|1|OMU|2921
7UQB|1|1|G|2922
7UQB|1|1|PSU|2923
7UQB|1|1|U|2924
7UQB|1|1|C|2925
7UQB|1|1|A|2926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2