HL_7UQB_071

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

7UQB|1|3|U|90, 7UQB|1|3|G|91, 7UQB|1|3|A|92

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_071 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3584

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7UQB|1|3|G|88
7UQB|1|3|G|89
7UQB|1|3|U|90
7UQB|1|3|G|91
7UQB|1|3|A|92
7UQB|1|3|C|93

Current chains

Chain 3

5S rRNA

Nearby chains