HL_7UQB_072

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

7UQB|1|1|U|545, 7UQB|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_072 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2365

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7UQB|1|1|U|541
7UQB|1|1|G|542
7UQB|1|1|C|543
7UQB|1|1|C|544
7UQB|1|1|U|545
7UQB|1|1|C|546
7UQB|1|1|G|547
7UQB|1|1|G|548
7UQB|1|1|U|549
7UQB|1|1|A|550

Current chains

Chain 1

25S rRNA

Nearby chains