HL_7UQZ_012

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

7UQZ|1|1|U|545, 7UQZ|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.561

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UQZ|1|1|U|541
7UQZ|1|1|G|542
7UQZ|1|1|C|543
7UQZ|1|1|C|544
7UQZ|1|1|U|545
7UQZ|1|1|C|546
7UQZ|1|1|G|547
7UQZ|1|1|G|548
7UQZ|1|1|U|549
7UQZ|1|1|A|550

Current chains

Chain 1

25S rRNA

Nearby chains