3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GAUUUUAUGC
Length
10 nucleotides
Bulged bases
7UQZ|1|1|A|1566, 7UQZ|1|1|U|1568, 7UQZ|1|1|U|1569, 7UQZ|1|1|U|1572, 7UQZ|1|1|G|1573
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7UQZ|1|1|G|1565
7UQZ|1|1|A|1566
7UQZ|1|1|U|1567
7UQZ|1|1|U|1568
7UQZ|1|1|U|1569
7UQZ|1|1|U|1570
7UQZ|1|1|A|1571
7UQZ|1|1|U|1572
7UQZ|1|1|G|1573
7UQZ|1|1|C|1574

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain 6
ITS2 rRNA
Chain X
60S ribosomal protein L25
Chain n
Pescadillo homolog
Chain q
Ribosome biogenesis protein NOP53
Chain t
Ribosome biogenesis protein RLP7

Coloring options:

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