HL_7UQZ_045

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_045 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2234

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UQZ|1|1|G|2110
7UQZ|1|1|G|2111
7UQZ|1|1|U|2112
7UQZ|1|1|A|2113
7UQZ|1|1|C|2114

Current chains

Chain 1

25S rRNA

Nearby chains

Chain I

Bud site selection protein 20

Chain R

60S ribosomal protein L19-A

Chain u

Ribosome biogenesis protein RLP24