HL_7UQZ_052

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

7UQZ|1|1|A|2678, 7UQZ|1|1|A|2679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_052 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2121

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7UQZ|1|1|A|2673
7UQZ|1|1|A|2674
7UQZ|1|1|C|2675
7UQZ|1|1|A|2676
7UQZ|1|1|G|2677
7UQZ|1|1|A|2678
7UQZ|1|1|A|2679
7UQZ|1|1|A|2680
7UQZ|1|1|U|2681

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L11-A