HL_7UQZ_057

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGUUAUAG

Length

8 nucleotides

Bulged bases

7UQZ|1|1|A|2845, 7UQZ|1|1|U|2846

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_057 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2155

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7UQZ|1|1|C|2840
7UQZ|1|1|G|2841
7UQZ|1|1|U|2842
7UQZ|1|1|U|2843
7UQZ|1|1|A|2845
7UQZ|1|1|U|2846
7UQZ|1|1|A|2847
7UQZ|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

rRNA-processing protein

Chain S

60S ribosomal protein L20-A

Chain s

Nuclear GTP-binding protein NUG1